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Wanted to post a follow up in case any others are interested in the results...
I had tried to add the listener back to one of the remaining nodes .ora file and then delete but that didn't work. Also, remove nodeapps continued to throw an error that it could not stop the listener or vip for the failed node.
After a few days of reading I make a decision to just unregister the abandoned services from crs. I made sure to backup the OCRCONFIG before I ran crs_unregister and was able to successfully remove the listener and vip services from the failed node.
This eliminated my issue with netca, the node did not show up there anymore. I then went on to remove nodeapps and it failed saying it could not find the resource vip. I then ran olsnodes -n and used crssetup to remove the node entirely. Everything showed removed and I went and updated the crs inventory to finish.
All looks good and now I am working to rebuild and add the node back in.