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Directory Server 6.3 Control Center has been released many years ago, so it has been certified (so this means that IT IS OFFICIALLY SUPPORTED) on the most common application servers at that time, so Tomcat 5.5 and Sun App Server 8.2.
Personally I've run the DSCC also on the latest releases of Tomcat (6.0.35 at the time of writing) and Glassfish (2.1.1 series) for test deployments absolutely fine; but in case of issues, if you want your solution to be 'officially supported' by Oracle, you've got to reproduce the problem on the supported app servers in the compatibility matrix.
P.S.: also Directory Server 6.3 is getting older and older... at least try to get the latest patch: 184.108.40.206.1
The latest release is now 220.127.116.11.0 if you don't have any architectural/sw compatibility constraint, try to move/migrate to a more recent release