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Integrator will attempt to start an RMI server on port 9999 when you execute an ETL graph. If some other process is bound to this port on your machine, you'll get this exception on ETL graph launch. You could identify the other process bound to port 9999 by running your OS's flavour of netstat.
You can also change the Server port to a free port at Window -> Preferences -> CloverETL -> Tracking .