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I have some thoughts -
First, can you validate the environment setup? We have a similar setup in rc.local:
su - endeca -c /app/endeca/Workbench/2.1.0/server/bin/startup.sh
Where endeca is the service user we use for all of the Endeca services.
I noticed your path up there for Workbench is strange to me.
Next, I'd check the tomcat logs in the Workbench workspace:
Or just look in that logs directory for any useful help. If nothing is logged, then the environment setup or paths or something like what Sivaraj suggested might be happening.