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For more information on your question please review the earlier thread - [How do I create an "EAC agent only" instance? |https://forums.oracle.com/forums/thread.jspa?threadID=2437215&tstart=0]
Your specific error appears to refer to the working directory property. In your AppConfig.xml it is defined as +/<instance#1-basedir>/apps/myproject+ where +<instance#1-basedir>+ refers to a location which does not exist on instance#2.
There are two possible avenues to pursue: First align the directory names on both servers so that they you variable +<instance#1-basedir>+ is also valid on instance#2. Another possibility is to ensure that the correct path variable is set for instance#2 regardless of whether it is the same as instance#1.
You were "spot on" as to what the problem was. My work-around was to create a soft link on the Agent only instance
/<instance#1-basedir> --> /<instance#2-basedir>But ... this should be configurable. AppConfig.xml should have a way of defining a working directory on the Agent only instance which is different.
Any idea how I can open a feature request?