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If you have any issues with merge you can go for this option
Admin tool->Options->General->Allow import from repository
Although if you followed the steps in the OBE and then are looking to Merge, there will be some redundancies for sure. I would suggest using either the OBE or the Merge with the pre-built Usage Tracking RPD.
Try this: http://paulcannon-bi.blogspot.co.uk/2012/11/how-to-install-usage-tracking-in-obiee.html