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When your doing a deployment,
Stop the Managed server,
Rename the folders "tmp" and "cache" to tmp_04012013 and cache_04012013 inside Weblogic/user_projects/domains/domain/servers/my_server/
(This is for clearing the Cache)
After Deployment-->Start the managed server.
On starting the services,new directory tmp and cache will be created and All the changes will be automatically be reflected.
As you have said,
After deployment js/jsp files to get updated through the scheduler in the following pathMake a point to restart the managed server once the scheduled job is complete(No need to clear the cache).
Assume your scheduler is set at 6.00,then restart the services around 6.30
Hope this helps.