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Ask some where which they are working on JBoss,
I, as a javacard developer can say, you can use SIO for javacard applet and can not answer you about SIO in JBOSS,
SIO is for one applet to access another applet in a different package across the applet firewall. SIO has nothing to do with JBoss. Depending on where the smart card and JBoss server are located (client/server or smartcard connected to server) you can either use javax.smartcardio.* or you need something running on the client to communicate with the smartcard through APDU's.