I don't say we can't run/execute multiple operations.because BAM Icommand supports Multiple Parameter Targets.please read document and get finalized.
http://docs.oracle.com/cd/E17904_01/integration.1111/e10224/bam_icommand.htm#SOASE1038-- in this doc see this section "How to Specify Multiple Parameter Targets"
To more about I command http://docs.oracle.com/cd/E17904_01/integration.1111/e10224/bam_app_icommand.htm#SOASE2336.
my suggestion is create a bat file or any script file based on your OS inside script file you can configure multiple parameters.
In BAM Icommand we export/import folders too if its DataObjects or reportrs or alerts too.