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You will have to merge the 2 web catalogs into 1.
You can use the catalog manager to merge it.
Thanks for the reply. Can I used OBIEE client tool for this. When I opened Cataloge manager only online option is available. Can I open catalogs offline like in Administator tool, so that I can merge 2 catloges offline and verify before deploying.
Yes. You can open the catalog manager in offline mode.
Suggest you to open 2 catalog managers in offline mode and do the copy n paste stuff.