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You may have turned off the Extension in SQL Developer? Go to Tools->Preferences -> Extensions and make sure Oracle SQL Developer Data Modeler is checked. it is near the bottom of the list so you will have to scroll down a bit.
Hi Kent, yes I thought there must have been an option I turned off. I have tried the Tools> Extensions > data modeller and it did indicate there was an update. But when I select it and continue nothing much happens and then it asks to reboot. But data modeller option is still not in the File menu.