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I found QXCR1000291039 for DP5.5 issue.
Data Protector 5.5 experiences slow performance when the DELETE command is used for database maintenance in Recovery Manager.This may be corrected on DP6.1, but if not, your issue might be caused by this bug.
If you can you contact to HP Support..
In general, running DELETEs through an MML is slow because the MML has to update it's catalog as well (i.e. besides Oracle updating it's catalog).
However, as pointed out, there may be product-specific (HP DataProtector) performance "bugs" as well.
Hemant K Chitale