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1- For CC 12c you have to use 12c agents. Lower agent versions will not work.
2- A " how to" on downloading agent software and adding it to your OMS can be found here: http://www.gokhanatil.com/2012/03/how-to-download-new-agent-software-for-oracle-cloud-control-12c-in-offline-mode.html
Push the agent to *UX servers: http://www.gokhanatil.com/2011/10/how-to-deploy-oracle-management-agent.html
If you want to push the agent to the Linux servers you have to install CYGWIN on the (Windows) OMS server.