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Yes it is possible.
You need to use
"1-system upgrade approach on same host"
"1-system upgrade approach on a different host"
In both approaches, it upgrades the Management Repository in the existing database itself, although downtime is involved.
Refer to below link for details
Edited by: dpapde on Feb 14, 2013 11:38 AM
If you want to do a fresh EM install with existing certified database then its possible. Read the guide for instructions1 person found this helpful
Please refer the mOS article
Step by Step Installation of Enterprise Manager Grid Control 126.96.36.199 [ID 1059516.1]