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I've tried the same 'hover-over-CLOB' in a CentOS 6(-x86_64)-environment with the latest SQL Developer connected to the same environment.
When I leave the field the hover-field the behaviour is as expected: the hover-field disappears and there are no residual problems.
$ java -version
java version "1.6.0_24"
OpenJDK Runtime Environment (IcedTea6 1.11.9) (rhel-184.108.40.206.9.el6_4-x86_64)
OpenJDK 64-Bit Server VM (build 20.0-b12, mixed mode)