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See Cloud Control Advanced Installation and Configuration: 22.214.171.124 Installing Using AgentPull Script.
In 12C you can get the software using Self Update console (Setup tab > Extensibility > Self Update).
The following document explains how to install agent using response file in silent method:
Note 1360083.1 : EM 12c: How to Install EM 12c Agent using Silent Install Method with Response File