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Just in case you haven't solved that already, I suggest you look into Sun DSEE DPS (Directory Proxy Server) as a means to create a "Virtual Directory" from various data-sources (your two directories). To the end-user (JBOSS) this would look as a single LDAP service serving, perhaps, two different branches of the same virtual root, or meshing the two datasources into one converged directory.
For an example of mixing a DSEE and an AD catalog see: