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Please see (Maintenance Wizard Overview [ID 215527.1]), "Types of upgrades the Maintenance Wizard can perform" section.
Yes it can. You need to manually enter the information for the R12 environment node/nodes as if it were installed. When you do finally get install your R12.1 upgrade filesystem you will have to update any information in the R12 node setup that does not match what you setup initially - for example paths to XML files and such.
Thanks for the info. That is what I was starting to do.