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Sometimes you can't see the forest for the trees. Thank you for noticing this error. In fact, Oracle recommends that you run the Pre-Upgrade Information Tool the night before upgrading. Since the Pre-Upgrade Information Tool utlu112i.sql generates the status of the database to be upgraded and provides a list of components and suggestions for fixes, this needs to be run before actually performing the upgrade. There may be problems that need to be fixed before running the upgrade.
The utlu112i.sql script needs to be run from the new release's directory: ORACLE_HOME/rdbms/admin. I think the entire procedure should be looked at again.