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The same thing exists in 10.2. version if you are changing Control Centers. Hints are "remembered" only for configuration which is active when you are adding hints. Do you have more than one configuration? Have you exported mapping using your default development configuration?
Thanks for your reply.
I am not changing Control Center and I am using the default configuration when exporting the mappings. The only difference I can think of is that my client does not wish to pay for the ETL licence option, so that is disabled when OWB is installed/configured, so maybe that is affecting the hints. I will install/configure a new repository to test this in the near future.
I can confirm that disabling the Data Integrator Enterprise Edition in the repository configuration was the cause of the hints being "lost".