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I misstated the version embedded with OBIEE's Informatica, it should be 5.5.30.
I talked to Oracle support who talked to Informatica. "Tomcat 5.5.35 is available as a one-off EBF on top of PowerCenter 9.1 Hotfix4. It is not available for PowerCenter 9.0.1 HF2. ... We only support Informatica PowerCenter 9.0.1 with HF2 , any other version or HF is not supported or certified. The PowerCenter 9.5 release will be bundled with Tomcat version 7.0.20 or higher ( it should be confirmed when it gets officially released by engineering team )."
So it seems that there is no path to Tomcat 5.5.35 or greater with the limited license supplied by Oracle until Oracle releases an upgrade to it.