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What is the WLS version??
There is know issue, for more information please refer this KM# 1202304.1.
I don't think you specify the config.xml file in the path for the first parameter. I grab the following example from within WLST after issuing the help('configToScript') command.
The first parameter only drills down to the $DOMAIN_HOME directory. Try using the example and see if that resolves the issue for you.