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You don't have such option through upload files as what FTP do but you can deploy the application through wlst.
Or you can use Deploy option to deploy app directly.
java weblogic.Deployer -adminurl http://localhost:7001
-username weblogic -password weblogic
-deploy ./myapp.ear -id myDeployment
This will upload file and place the file there from there you can manipulate the file.
Hope this will work for you.