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No it won't because the hot backup is a copy period. So do it ASAP and the Archive will handle the rest.
So your hot backup is the Standby copy ( exact copy ). Just make sure forced logging is on and the archive with keep the data in sync.
If you delay then you are up the creek without a paddle as NOLOGGING actions are bound to occur and then the Standby data will not match the Primary.
If you have doubts your best option is to roll the standby forward using RMAN Incremental Backups :