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SQLPlus runs scripts, and the functionality to run scripts is in SQLPlus itself to the best of my knowledge -- ie, its not client functionality that sqlplus exposes, it's sqlplus itself. There's nothing built in to ODP to run scripts.
If you search this forum I remember a while back (a year maybe? maybe 2) someone posting a solution they came up with to parse sql scripts and execute the statements one-by-one, but as you've indicated there may be issues with that.
This seems like a good suggestion for a feature addition, given that sqlplus won't be available with the managed provider. You can post enhancement requests at http://apex.oracle.com/pls/apex/f?p=18357:46