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Are you sure you are not caught in a GC run?
if you are loading a lot of info you might trigger a Full GC and then it might halt you while it is doing it...
is it the same object that freezes every time or different ones?
starting lh with larger memory might alleviate the probrem.
Also, is DB (repository) doing everything in time?
You don't mention platform, but if on sun solaris you might be able to check threads out to see what its doing and what hangs and not...
in our was platform we realized that thread #5 and #6 always runs the GC, so it's easy to spot if they are the culprit.