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Yep, one of those moments where you learn that programming is hard. Normally the JAX-WS implementation as part of the JDK is used, but when you add Axis 2 apparently it is used as the JAX-WS implementation in stead and the results are different. There is no quick fix, the Axis 2 manual or an Axis 2 forum/mailing list is the place to look for info.
and it gets even funnier if you switch JRE providers (i.e. start running IBM or JRockit JVMs).