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contents of the file configToolFailedCommands is as follows:
# Copyright (c) 1999, 2009, Oracle. All rights reserved.
Also, to note the secure linux is set to enforcing on this server, would that cause any problem for the agent installation.
$grep -i selinux /etc/selinux/config
# This file controls the state of SELinux on the system.
# SELINUX= can take one of these three values:
# enforcing - SELinux security policy is enforced.
# permissive - SELinux prints warnings instead of enforcing.
# disabled - No SELinux policy is loaded.
# SELINUXTYPE= can take one of these two values:
If you can provide the installActions log from cfgtoollogs/oui OR oraInvnetory/logs location, we can get more information about the exact cause for the issue.
Also if possible suggest to go through the following doc, which describes possible scenarios for this failure:
Troubleshooting the 'oracle.sysman.emcp.agent.AgentPlugIn has failed' error (Doc ID 734981.1)