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There are two options I can suggest
1- While upload of data, use the merge option. This will mean that the entire data is no over written and only the data points as in the file are updated. Down side is that if you load a file the second time, which does not have a data point as in the intial load, the balance sheet will not tally as you would end up having new and old data.
2- In the application settings, protect the [NONE] member in the data protection. This should protect the data from being over written. I assume here that non-currency data is being input at members other than [none] members