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Not sure whether you got the answer to this query, but let me give a shot here. Basically this message you are observing is logged when there are a missing libraries (which are being referenced in application deployment descriptors) while the application initialization/activation/deployment. In your case its:
Now till here everything is understandable from the message, the key war that seems to be missing here is "adf.oracle.domain.webapp.war", which I think you can find in:
You can try to deploy using the admin console (as a normal deployment) to the managed node where you are deploying your ear.