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you have to update the following properties in $OMS_HOME/oui/prov/ssPaths_msplats.properties to reflect the new cygwin installation location.
Sorry - I just saw this post.
Changing all the entries from C: to M: still only accounts for one path. Can you account for multiple paths (all other servers have CYGWIN on the C: but the Citrix servers only have M: - I need to account for both install locations)