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What sort of jobs are you running? Can you post the job arguments you are using as well?
In general I can't see how running jobs will limit being able to log in via ssh, but we'll see. One thought is that if you are using ssh connections within your job script, maybe you need to increase the max number of ssh sessions in your sshd config file.
Check with your Unix SA. Sounds like your O/S accounts are just locked.
Try runnning ssh <connect string> -v
The dash v is for verbose ouput