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I think that using a good debugging tool that allows you to step through code, set break points and examine variables is the most effective method.
I guess by "writing to console" you mean writing to the Java Console via System.out.println in a custom javabean in web deployed forms, and by "writing into a debug file" you mean writing into a file probably via (client_)text_io?
Ah well, I never really liked guessing anyway, so in order to get informations which are not based on guessing and solving riddles you should add some more details (like version infos for example) and what "debug file" and "console" means...