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"nmEnroll" is required to register your weblogic domain with the nodemanager running on that machine, so that nodemanager can monitor resources associated with the enrolled domain.
In your case suppose you have 2 managed servers each on domain A & B and all on same machine M1. Now you start a nodemanager on machine M1 and enroll domain A & B with nodemanager on M1. Post that you can configure managed server on both domain to be monitored by nodemanager, so nodemanager will start/stop that server, auto-restart on failure, perform a crash recovery, etc.