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You can deploy using "emcli" utility as shown below:
emcli login -username=sysman -password=<password> emcli deploy_plugin_on_server -plugin="oracle.sysman.vt"
Prem, you are on the right track. Your two options to deploy the plug-in are: either using emcli (as suggested by Asif), or use the GUI.
The steps are documented here: http://docs.oracle.com/cd/E24628_01/doc.121/e24473/plugin_mngr.htm#CJGCDHFG