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Some of the nodes at the end of the first cluster are converting very slowly. Could having so many (24) IBR nodes on one cluster affect the performance of the IBR nodes on this cluster? Would breaking off some of those nodes onto the separate cluster help performance?
Conversions could be slow due to various reasons like conversion engine performance , file sizes and complexities etc. But, to find what is causing the issue you will need to enable tracing requestaudit,file*,ref*,ibr* + Full verbose.
Along with this Enable verbose logging for the agent from IBR Console - Administration - Agent Management .
Plus, look for latest OIT patches that are available for the version and platform and apply the same on this environment to test further .