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Since you have already overpaid, the best way to achieve this is by raising a debit memo.
First you correct your receiving. This will leave the net entries between inventory and accrual account (assuming that you have received this into inventory).
Cr. Inventory $100
Dr Accrual $100
If you are using the functionality of raising debit memos while returning (not correcting) you can raise a debit memo automatically.
You can enter a debit memo (uses negative amounts) manually in AP.
Cr Liability $-100
Dr Accrual $-100
This will take care of your accrual inventory and liability accounts. You can apply this to an invoice in the future thus reducing your liability hance cash flow (out).
Thanks for the info.