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First of all, please start using create_entailment API instead of that create_rules_index API.
Regarding 1), 5GB temp space is not a whole lot.
It is hard to say exactly how much you need because you have user defined rules.
Regarding 2) and 3), please check out the following inference best practice paper.
Also, if you like, please post your rules and I may be able to help you model
some of your rules using native OWL constructs.
Thanks for your response, the doc you suggested is very useful, can you please drop a mail to pkmaddal
Glad that document helps. An email is on its way. Cheers.