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JDeveloper and SQL Developer let you manage code that's kept in files and databases - together, they replace Codebase's Maintain Versions, Maintain Project, and Object Finder functions.
Enterprise Manager's Configuration Management Pack tracks changes to files and database records - it replaces Codebase's Change Finder functions.
Enterprise Manager's Application Change Management Pack replaces Codebase's promotion functions. It lets you combine your developers' changes into patches, then define workflows for approving and applying those patches.