Adjustment to Subsystem Error - Possible to Turn Off or Avoid?

Summary:

Is it possible to turn off the warning for Adjustment to Subsystem on either a Profile basis or enterprise-wide? Or is there something we should do different to not have this warning display?

Content (please ensure you mask any confidential information):

We have our AP account whose GL balance includes both the normal subsystem AP balance plus some minor additional liabilities/adjustments that arise from system adjustments (i.e. held check reclasses and other minor adjustments necessary for GAAP financial statements). Whether we list those additional adjustments as an adjustment to the GL (which we don't love since we like to use this option to reflect open potential journal entries and not entries like these that are already recorded in the GL) or an adjustent to the subledger, either option gives us a warning that there is an adjustment to the subledger on