Inventory transfers are only posting one side of the transfer

We have started having issues where only one side of the inventory transfer is posting to the cardex and g/l.  I have not found any SARs for this on the Knowledge tab.  We opened an SR and we were told we would have to go into all the files and correct using SQL.  Not real happy doing that and was hoping someone may have another way to fix these as well as maybe a SAR.  Thanks