ACH Rejections

How do most companies deal with ACH or EFT rejections within payables?  We received rejects of a transaction within a batch.  Currently we void the check and reissue against the existing invoice, but if the monies have been withdrawn from the bank, reconciled within cash management, the original transaction is a closed transaction, reconciled and completed.  The rejected transaction is redeposited a day or three later.  As we shouldn't unreconcile and void the original payment, my thought is to create a debit memo on the suppliers account to repay the rejected payment on, but how have others dealt with this