Voiding a Manual Payment w/out Voucher

It has been years since I've see this issue and cannot find any documentation on how to resolve this.  My client is using manual payments w/out voucher match and voided the payment, but not the associated vouchers.  She then created another manual payment, but used the previous vouchers.  The R047001A is out of balance by this same amount and the F0411 is higher that the F0902.  Please advise.

Thanks,

Patrick