Automatic Remittance Exeception report error "Capture of Credit Card Transaction Failed"

We ran the Automatic Remittance program (API) and received errors on some of the receipts saying "Capture of credit card transaction failed".  When we created the bank file, these records were duplicated on the bank file. We did have others get on the bank file with no issues.  All receipts use the same receipt method. The only unique thing that happened with the records getting this error was tha our user acidently kicked off the API in the middle of the day and terminated it.  These records got flagged a certain way and created the error and the duplication on