Payroll Time Card Upload & Labor Distributions

We have been using the Labor Distribution to split wages out into other accounts.  The split is entered in the Labor Distribution screen (060151) by employee based on a percentage.  The splits were working until recently, when we began to upload our timesheets.  For exempt employees the OT rate is being cacluted as gross pay, although the employee is not receiving this money, but there is now a variance between the check and the history file.  Is there a processing option that needs changed?  (We use JD Edwards World v9.2.1).  Any ideas as to what I can look at to