How to handle the Organizational level costing in payroll

HI Team,

Any once please help out how to achieve the Below scenario:

For my client we are implementing the One payroll for all branches

They want each organization accounting how much they are spending so for that we configured costing level in organization for  two costing segments(Organization and Cost centre) so it can override the element link costing, But in the balancing segment it is not overriding as this behavior is correct, But after transferring this to GL in there the organization segment are not maching for credit and debit accounts, so it is giving error  as Unbalanced account when posting it.