Is it possible to generate a consolidated invoice with different VAT code?

1) We have and order starting from France (continental) going to Corsica

2) This order is shipped in three legs

    - First leg is inside France from Warehouse to Dock transportation by Track, normal VAT 20%  Shipment 1
    - Second leg from Dock to Corsica transportation by Boat, VAT 0% Shipment 2
    - Third leg distribution multi stop by Track in Corsica, VAT 13% Shipment 3
3) The transportation service  is done by the same Service Provider
4) We create one invoice per Shipment but by month-end we generate a consolidated Invoice.
5) We have three VAT Codes

     - Normal France 20% based on Country code FRA

     - Ferry VAT 0% based on special Country code FR21