Payment Process Request Templates

At our company we have been separated by two companies with two separate bank accounts and payment processes for about 3 years. In setting up the two we have two separate payment process templates. I'll call our companies company 1 and company 2. Company 1 is the company we are keeping while company 2 is being consolidated into company 1 so we are moving the employee's GL accounts into company 1. After successfully flipping company 2's employees to company 1's corporate GL number I thought our payment template for company 1 would pick up all of these employee expense invoices,