Document unfiled when checkin from WebCenter Enterprise Capture Client

Hello,
I'm a newbie to Oracle WebCenter Enterprise Capture and I have configured a document profile (I have also mapped Content Server fields to capture fields) to checkin documents on the content server. I try to checkin documents from the Capture Client (they end up on the content server as expected), but the documents are unfiled.

What I'm trying to do is checkin documents (specific document profile) from the Capture Client into a specific library folder I have already created on the content server. 

I have read some WebCenter Enterprise Capture documentation but I can't figure out how to do it (maybe I'm missing something :) ).