Expense report reimbursement

Is there any way to update an expense report and line from APY status to PD status if the expense reimbursement has been paid by AP? We have a situation where an expense report was approved, staged, liabilities posted and the paycycle manager process ran and the AP payment generated to an employee. Before running the process to post payments the report was sent back to a pending status (custom process) and then resubmitted, staged, post liabilities, post payments. The staging process is running to no success due to the duplicate reimbursement line on the expense report.